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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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Stepwise GK.1.10+S:A475V(Designated GK.1.10.1)+S:Y200C(43 seqs,2 countries)+S:L5F,N450D(20 seqs, 2 countries) #2479

Closed aviczhl2 closed 5 months ago

aviczhl2 commented 6 months ago

From branch 1 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/814

GK.1.10+C22986T(S:A475V)+C29668T+A22161G(S:Y200C)+C5526T(Orf1a:T1754I)+C21575T(S:L5F),A22910G(S:N450D)

GISAID query for GK.1.10+S:A475V: C12651T, C28567T,C22986T,-T7049C No. of seqs: 65(Brazil 54 UK 7 Philippines 1 USA 3) First: EPI_ISL_18572803, Brazil, 2023-9-11 Latest: EPI_ISL_18831479, Brazil, 2023-12-28

GISAID query for S:Y200C sub-branch: A22161G, C12651T, C22986T No. of seqs: 40(Brazil) First: EPI_ISL_18558732, 2023-9-20 Latest: EPI_ISL_18831479, 2023-12-28

GISAID query for S:L5F,N450D sub-sub-branch: C21575T,A22910G,C5526T No. of seqs: 19(Brazil) First: EPI_ISL_18814311, 2023-12-3 Latest: EPI_ISL_18831479, 2023-12-28

usher

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Sinickle commented 5 months ago

The L5F N450D subbranch is now found in Florida - 1 seq, collected Jan 16.

corneliusroemer commented 5 months ago

Child lineages with 200C and 450D are interesting but still a bit slow, let's wait a bit more

aviczhl2 commented 5 months ago

+1 USA for Y200C,L5F,N450D branch