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Repository for suggesting new lineages that should be added to the current scheme
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JN.1.1/HW.1.1 (XBC.1.6.3.1.1) recombinant, Finland, 6 samples #2489

Open JosetteSchoenma opened 5 months ago

JosetteSchoenma commented 5 months ago

Credit to @NkRMnZr, who found this one before I did.

Description: JN.1.1/HW.1.1 (XBC.1.6.3.1.1), HW.1.1 Spike, JN.1 beginning and end. Private mutations: Really private: C5878T, C15946C, C27635T From JN.1.1: C1612T, C28531T From HW.1.1: G17144A Breakpoints: between nucleotide 3565 and 4184 and between 26270 and 26529 Earliest sequence: 2024-01-07 from Finland Most recent sequence: 2024-01-17 from Finland Countries circulating: Finland 4 GISAID query: T24529C, C25854T, G26529C

Nextclade: image image

Usher tree: image

Samples: EPI_ISL_18873362 EPI_ISL_18832821 EPI_ISL_18832820 EPI_ISL_18832806

FedeGueli commented 5 months ago

EPI_ISL_18873362

I think there is a typo in the query : i suggest this one: G17144A, C22120T,C1612T, T3565C

FedeGueli commented 5 months ago

C55878T

i think it is C5878T

JosetteSchoenma commented 5 months ago

EPI_ISL_18873362

I think there is a typo in the query : i suggest this one: G17144A, C22120T,C1612T, T3565C

I copied in the wrong query. Sorry. Should be oke now. Thanks, @FedeGueli

corneliusroemer commented 4 months ago

Thanks! I also remember seeing this one, would be good to wait for a different lab to see this but then worth designating.

JosetteSchoenma commented 4 months ago

6 now. 1 from a different lab @corneliusroemer . Worse quality though.