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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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JN.1.8 Plus S:R346T (34 sequences, 8 countries including 3 different African countries) #2495

Closed FedeGueli closed 6 months ago

FedeGueli commented 7 months ago

Former branch 9 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089

There is a sublineage of JN.1.8 with S:R346T, that likely will deserve a designation having been found already in 5 continents despite the small number of sequences including Africa.

Defining mutations: JN.1.8 > A12928G,> S:R346T (G22599C), Query: A12928G, G22599C,C27476T Samples : 27 Countries: Australia, NZL, France, Canada, Singapore, US, Uk, Nigeria IDs:EPI_ISL_18700854, EPI_ISL_18700885, EPI_ISL_18700900, EPI_ISL_18728695, EPI_ISL_18757659, EPI_ISL_18779344, EPI_ISL_18779965, EPI_ISL_18808493, EPI_ISL_18809293, EPI_ISL_18842214, EPI_ISL_18850209, EPI_ISL_18859463, EPI_ISL_18867202, EPI_ISL_18880191, EPI_ISL_18892580, EPI_ISL_18907782, EPI_ISL_18910154, EPI_ISL_18910176, EPI_ISL_18910247, EPI_ISL_18913511, EPI_ISL_18915627, EPI_ISL_18916637, EPI_ISL_18916649, EPI_ISL_18916651, EPI_ISL_18916656, EPI_ISL_18916660, EPI_ISL_18916666

Tree:

Screenshot 2024-02-21 alle 13 39 10

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice2_genome_test_41bc1_5d8d80.json?label=id:node_6904022

FedeGueli commented 7 months ago

34 sorry i ve edited a previous wrong issue update

aviczhl2 commented 6 months ago

Designated JN.1.8.2

FedeGueli commented 6 months ago

via https://github.com/cov-lineages/pango-designation/commit/ce0782ace48769d2d5c5d502482ccd306cc5907f