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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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XDU: XBB.1.16/BA.2.86.1 recombinant, 19 samples from Japan #2502

Closed JosetteSchoenma closed 3 months ago

JosetteSchoenma commented 4 months ago

Description: XBB.1.16(https://github.com/cov-lineages/pango-designation/issues/2404)/BA.2.86.1 recombinant. 1 breaking point, Spike from BA.2.86.1 Private mutations: C12115T C3177T, C3587T and C3944A from XBB.1.16, C26078T from BA.2.86.1 Breakpoint: between nucleotide 11957 and 12729 First sequence: 2023-10-11 from Japan/Kanagawa Latest Sequence: 2024-02-01 from Japan/Tokyo Countries circulating: Japan GISAID query: C3944A,C12115T

Usher tree: image

See https://github.com/sars-cov-2-variants/lineage-proposals/issues/1084 for more info

aviczhl2 commented 3 months ago

+1

FedeGueli commented 3 months ago

one only from February

aviczhl2 commented 3 months ago

+3, 19 seqs now

FedeGueli commented 3 months ago

C3944A,C12115T

now also present in March.

JosetteSchoenma commented 3 months ago

XDU