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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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JN.1.4 plus S:T572I ( 322 seqs) #2504

Closed FedeGueli closed 3 months ago

FedeGueli commented 7 months ago

Ex Branch 19 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097

JN.1.4> T18453C > S:T572I (C23277T) Query: C23277T,T18453C,C774T,-G3085T,-G3085T,-T1483C,-C4795T,-T9769C,-C401T,-C29311T,-T18471C,-C2232T,-C25465T,-C1288T,-C3177T,-G910A,-C1762A,-G7393A,-C10748A,-C6781T,-A14487T,-C28201T,-G2202T,-A13308G,-C15277T,-C23595T,-T18164C,-C6541T,-C19320T,-A9782G,-T7734C,-A161G,-G6169T,-T11092A,-C7600T,-C19763T,-G910A,-A977C,-G18816C,-C23595T,-C8668T,-T13294C,-G10151A,-C8668T,-C23595T,-C17745T,-C1762A,-G6183A,- C14649T,-C26192T,-C10078T,-A7319G,-T14091C,-G25112T,-C1426T, Samples: 74 (? @corneliusroemer i ve tried to exclude most of the unrelated branches but still not sure of the real numbers of this lineage While here you can find the sequences put together by Usher in the tree of this lineage

image

Countries:12 Tree:

Screenshot 2024-02-27 alle 15 14 56

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_test_2cdac_dec850.json?f_userOrOld=uploaded%20sample&label=id:node_6958375

FedeGueli commented 7 months ago

15 countries and close to 100 seqs i suggest a designation of this one @corneliusroemer although the query is a nightmare (now updated)

aviczhl2 commented 6 months ago

Designated JN.1.4.6

FedeGueli commented 6 months ago

Designated JN.1.4.6 via https://github.com/cov-lineages/pango-designation/commit/58f350c503054d0dbadb6b221c159d88d9dc65f5

FedeGueli commented 6 months ago

97 with query updated

FedeGueli commented 4 months ago

226

FedeGueli commented 3 months ago

308

FedeGueli commented 3 months ago

too messy