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Repository for suggesting new lineages that should be added to the current scheme
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JN.1.11 (S:V1104L) got S:R346T being caught multiple times in GBW samples (35) and further gaining S:F59L (10) #2542

Open FedeGueli opened 3 months ago

FedeGueli commented 3 months ago

Formerly known as Branch 61 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089

JN.1.11 > S:R346T Query: G22599C,T3565C,-C7113T,G24872T,G17334T,-T22928C Samples: 13

Countries: Australia, India (3 states), Sri Lanka (GBW), US, Wales IDs:EPI_ISL_18912232, EPI_ISL_18937508, EPI_ISL_18937595, EPI_ISL_18974099, EPI_ISL_18983800, EPI_ISL_18987776, EPI_ISL_18994562, EPI_ISL_18998316, EPI_ISL_19000809, EPI_ISL_19000860, EPI_ISL_19000970, EPI_ISL_19016227, EPI_ISL_19019176

Tree:

Screenshot 2024-03-31 alle 18 04 14

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_313d4_94d180.json?label=id:node_11373385

Three samples from two patient have got S:F59L Query for it: G22599C,T3565C,G24872T,T21737C,-C7113T,G24872T,G17334T,-T22928C

FedeGueli commented 3 months ago

16 now

FedeGueli commented 2 months ago

19 and 5 now

FedeGueli commented 2 months ago

28 Now 9 with S:F59L

FedeGueli commented 1 month ago

Slowed down

aviczhl2 commented 3 days ago

There is a further FLiRT sub-branch of this emerging.

Query: -25359,G22599C,T3565C,G24872T,T21737C,-C7113T,G17334T,T22928C Only 4 and not recent, maybe dead.

FedeGueli commented 3 days ago

Reopening for a while