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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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KT.1 (GE.1.2.1) sublineage with S:D>G253V and S:T739A #2545

Closed FedeGueli closed 5 months ago

FedeGueli commented 6 months ago

There is a sublinegae of GE.1.2.1 displaying two further spike mutations: one mutating the XBB.2 defining mutation S:D253G to V The other S:T739A is in a region of S2 where we saw mutations all the time but none got fixated in a dominant lineage.

Defining mutations: KT.1>> C2836T, T4741C, T17568C, S:D253G (G22320T), S:t739A (A23777G) Query: C2836T, T4741C Samples: 11 (US-7 States) First : 2023-12-21 California Last: 2024-03-19 Delaware

IDs: EPI_ISL_18783943, EPI_ISL_18818262, EPI_ISL_18846650, EPI_ISL_18849378, EPI_ISL_18852323, EPI_ISL_18884120, EPI_ISL_18884378, EPI_ISL_18921338, EPI_ISL_18967436, EPI_ISL_18972593, EPI_ISL_19025596

Tree:

Screenshot 2024-04-03 alle 10 42 22

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice20_genome_test_32cd4_c98b80.json?c=userOrOld&label=id:node_4169537

FedeGueli commented 6 months ago

oh sorry i misplaced it here. not duplicating it for now , low priority.

FedeGueli commented 5 months ago

closing it