JN.1.1.6 FLiRT branch sibling of KZ.1.1 (51 seqs)

[FedeGueli]

Formerly tracked as Branch 32 FLIRT of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089 Defining mutations: JN.1.1.6 (C11747T > S:F456L=T22928C) > C11704T, S:R346T (G22599C) Query: C11704T, C11747T,G22599C,T22928C,-G16741T ( credit to @aviczhl2 for it ) Samples : 13 Countries: UK, Singapore, India, South Korea , Canada, USA, UAE (via GBW) IDs: EPI_ISL_18771047, EPI_ISL_18806775, EPI_ISL_18932508, EPI_ISL_18936359, EPI_ISL_18936367, EPI_ISL_18983770, EPI_ISL_18999263, EPI_ISL_19017471, EPI_ISL_19032843, EPI_ISL_19042503, EPI_ISL_19042512, EPI_ISL_19044641, EPI_ISL_19046571 Tree:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice3_genome_test_1eb14_95efb0.json?label=id:node_6989986

[FedeGueli]

16

[FedeGueli]

18, +Spain

[FedeGueli]

20 +2 US

[FedeGueli]

there are two more samples of this one with S:T572I both not found by the query for unexplicable reasons.

[FedeGueli]

there are 32 samples of this on Usher with only 21 found by the query on Gisaid:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice9_genome_test_2a0bc_678ee0.json?c=userOrOld&label=id:node_7016088

[FedeGueli]

@corneliusroemer i suggest designation of this one although JN.1.1 backbone is the slowest.

[FedeGueli]

23 on gisaid

[FedeGueli]

34

[FedeGueli]

dying off

[FedeGueli]

42 samples with old samples uploaded from India and new ones from NZL better tracking it for a bit more

[FedeGueli]

slowed down closing it (even if in NZL could have still some circulation)