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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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TRIO KP.5 (JN.1.11.1 + S:T572I) with S:R346T (84) #2568

Closed FedeGueli closed 2 months ago

FedeGueli commented 5 months ago
Original KP.5 proposal Formerly tracked as Branch 63 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097 and for FLiRT>Trio branch as Branch 111 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089 JN.1.11.1 >S:T572I (C23277T) Query:C7113T,C23277T,T3565C, G24872T,-G9010A,-C6070T,-A24819G,T22928C Samples: 15 EPI_ISL_18989868, EPI_ISL_19012494, EPI_ISL_19022916, EPI_ISL_19028021, EPI_ISL_19032236, EPI_ISL_19032824, EPI_ISL_19038709, EPI_ISL_19055484, EPI_ISL_19055680, EPI_ISL_19058372, EPI_ISL_19070036, EPI_ISL_19070190, EPI_ISL_19070263, EPI_ISL_19073920, EPI_ISL_19076771

Now with a FLiRT > TRIO Branch: KP.5 > C3811T > C2197T, C9857T, S:R346T (G22599C) ,A23080G (S:Q506Q) New query: C3811T, G22599C,C23277T, G17334T by @aviczhl2 from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1724 [former Query:C3811T , C2197T, C9857T,T3565C ] Samples: 3 (US)

Tree:

Screenshot 2024-04-27 alle 23 36 08

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_150f8_c372a0.json?label=id:node_6971654

FedeGueli commented 4 months ago

Designated KP.5 via https://github.com/cov-lineages/pango-designation/commit/dbfae3452ac61eee3ade4f9fa7025475b9a09c03

FedeGueli commented 3 months ago

the trio branch has now 11 seqs

FedeGueli commented 2 months ago

84, only 20 in July tough and with many from Canada, i think this will die off.