JN.1 + S:V1229I emerged in Russia - 10% after March 1 in St Petersburg region (126 seqs )with a branch with S:T572I (9)

[FedeGueli]

This was tracked in https://github.com/sars-cov-2-variants/lineage-proposals/issues/1360 Although not super fast it kept a local high prevalence in St Petersburg area until today. It got a couple of unrelated sequences with S:R346I and a small branch with S:T572I

JN.1 >> ORF1a :T2846I (C8802T) > S:V1129I (G24947A) Query: C8802T,G24947A Query. for S:T572I: C23277T,C8802T,G24947A Samples 122 ( 8 with S:T572I) Countries: 4 Mainly Russia

IDs:

EPI_ISL_18686250, EPI_ISL_18686264, EPI_ISL_18831128, EPI_ISL_18831148, EPI_ISL_18845517-18845518, EPI_ISL_18845520, EPI_ISL_18845532, EPI_ISL_18845555, EPI_ISL_18845569, EPI_ISL_18845581, EPI_ISL_18845593, EPI_ISL_18845595, EPI_ISL_18845605-18845606, EPI_ISL_18962921, EPI_ISL_18973593, EPI_ISL_18973600-18973601, EPI_ISL_18973637, EPI_ISL_18973643, EPI_ISL_18973660, EPI_ISL_18973665, EPI_ISL_18973667, EPI_ISL_18973678, EPI_ISL_18973688, EPI_ISL_18973701, EPI_ISL_18973704, EPI_ISL_18973706-18973707, EPI_ISL_18973709, EPI_ISL_18973716, EPI_ISL_18973739, EPI_ISL_18973742-18973743, EPI_ISL_18973764, EPI_ISL_18973767, EPI_ISL_18973772, EPI_ISL_18973783, EPI_ISL_18973798, EPI_ISL_18973800, EPI_ISL_18973802, EPI_ISL_18973811, EPI_ISL_18973816, EPI_ISL_18973862, EPI_ISL_18973876, EPI_ISL_18973883, EPI_ISL_18973902, EPI_ISL_18973907, EPI_ISL_18973915, EPI_ISL_18973917, EPI_ISL_18973930-18973932, EPI_ISL_18973937, EPI_ISL_18973939, EPI_ISL_18973947, EPI_ISL_18973959, EPI_ISL_18973967, EPI_ISL_18973983, EPI_ISL_18973998, EPI_ISL_18974003, EPI_ISL_18974007, EPI_ISL_18974021, EPI_ISL_18974032, EPI_ISL_18974036, EPI_ISL_18974038-18974039, EPI_ISL_18974047, EPI_ISL_18974054, EPI_ISL_18974072, EPI_ISL_18974081, EPI_ISL_18974103-18974104, EPI_ISL_18974106, EPI_ISL_18974120, EPI_ISL_18974123, EPI_ISL_18974125-18974126, EPI_ISL_18974133, EPI_ISL_18974138, EPI_ISL_18974141, EPI_ISL_18974145, EPI_ISL_18974156, EPI_ISL_18974183, EPI_ISL_18974228, EPI_ISL_18974244, EPI_ISL_18974267, EPI_ISL_19022403, EPI_ISL_19022409, EPI_ISL_19022421, EPI_ISL_19022455, EPI_ISL_19022497, EPI_ISL_19022513, EPI_ISL_19022550, EPI_ISL_19022603, EPI_ISL_19060504, EPI_ISL_19060548, EPI_ISL_19060651, EPI_ISL_19060681, EPI_ISL_19060691, EPI_ISL_19060712, EPI_ISL_19060730, EPI_ISL_19060737, EPI_ISL_19060751, EPI_ISL_19060761, EPI_ISL_19060765, EPI_ISL_19060780, EPI_ISL_19060825, EPI_ISL_19060836, EPI_ISL_19060845, EPI_ISL_19060851, EPI_ISL_19060860, EPI_ISL_19060875, EPI_ISL_19060880, EPI_ISL_19060883, EPI_ISL_19060885, EPI_ISL_19062303, EPI_ISL_19062337, EPI_ISL_19062351, EPI_ISL_19062365, EPI_ISL_19066795

Tree:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_29d5d_f687d0.json?c=gt-S_572&label=id:node_7050993

[FedeGueli]

Not expanding outside Russia, closing for now