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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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JN.1 FViRT (346T+456V) with S:G181R, Orf3a:Q213K and PLPro_T75I from Singapore (8 sequences) #2582

Closed FedeGueli closed 1 month ago

FedeGueli commented 1 month ago

Previous Branch 89 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089

JN.1 > Orf3a:Q213K (C26029A) > Orf1a:T1638I (C5178T) >T8278C, S:G181R (G22103A), S:R346T (G22599C), S:F456V(T22928G) Query: C26029A,C5178T,T8278C Samples: 8 Singapore EPI_ISL_19033218, EPI_ISL_19033252, EPI_ISL_19095577, EPI_ISL_19095616, EPI_ISL_19095748, EPI_ISL_19095827, EPI_ISL_19095934, EPI_ISL_19096036 Tree:

Screenshot 2024-05-06 alle 14 24 50

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice5_genome_test_1baf3_8b9380.json?c=gt-S_181&gmax=25384&gmin=21563&label=id:node_6947533

FedeGueli commented 1 month ago

not expanding

FedeGueli commented 1 month ago

Desingated JN.1.56.1 via https://github.com/cov-lineages/pango-designation/commit/ba51d8aeb4ac68270a4e7e3a7d26b030d2eeb9d7