search

cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
Other
1.03k stars 97 forks source link

JN.1.11.1 + C5467T got FLiRT (73) #2583

Open FedeGueli opened 1 month ago

FedeGueli commented 1 month ago

Former Branch 100 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089 ( be aware there are two JN.1.11.1 branches with 5467T and FLiRT )

Defining mutations: JN.1.11.1 > C5467T > S:R346T (G22599C) Query: C5467T, G22599C,C7113T,-C9857T,T3565C Samples: 14 from Uk, Taiwan , Singapore, Canada, India, Australia with an unclear sub branch with S:F59S : Query: T21738C,C5467T,C7113T Samples: 3 (Taiwan,Singapore,Australia) Samples: EPI_ISL_19010304, EPI_ISL_19013458, EPI_ISL_19054979, EPI_ISL_19055640, EPI_ISL_19062567, EPI_ISL_19062641, EPI_ISL_19066217, EPI_ISL_19071001, EPI_ISL_19088236, EPI_ISL_19095652, EPI_ISL_19095844

Tree:

Screenshot 2024-05-06 alle 14 52 42

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_1baf3_8b9380.json?label=id:node_6978268

FedeGueli commented 1 month ago

15

FedeGueli commented 1 month ago

20 now most recent samples coming from Australia and Spain

FedeGueli commented 1 month ago

27

FedeGueli commented 3 weeks ago

45 not sure how much it could do likely Nextclade reads it as KP.2 so i m closing it

FedeGueli commented 2 weeks ago

53 with recent samples reopening