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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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JN.1.11.1+ C5467 FLiRT (11) emerged in India #2606

Closed FedeGueli closed 3 weeks ago

FedeGueli commented 1 month ago

Formerly tracked as Branch 85 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089

JN.1.11.1 >> C5467T > C9857T > S:R346T (G22599C ) Query: C9857T ,C5467T, G22599C,T3565C Samples: 10 India UK

EPI_ISL_19025926, EPI_ISL_19033170, EPI_ISL_19033172-19033173, EPI_ISL_19088087, EPI_ISL_19108471, EPI_ISL_19146850, EPI_ISL_19148727, EPI_ISL_19153946, EPI_ISL_19157915,

Screenshot 2024-05-24 alle 14 53 38

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_64764_8daa0.json?f_userOrOld=uploaded%20sample&label=id:node_6992995

Note that most of the branches have additional spike mutations.

FedeGueli commented 3 weeks ago

Unrelevant closing it