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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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JN.1.25.1 FLirt (15) with a S:S31del sub branch (3) #2608

Closed FedeGueli closed 1 week ago

FedeGueli commented 1 month ago

Known as Branch 139 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089 JN.1.25.1 >> C7318T > G26648A > C28948T > S:F456L (T22928C) Query: C7318T , G26648A ,T22928C Samples: 8 Canada , UAE (GBW), Uk
First collected on 2024-02-08 from UAE (GBW) IDs: EPI_ISL_18914548, EPI_ISL_18937396, EPI_ISL_19140331, EPI_ISL_19144001, EPI_ISL_19146658, EPI_ISL_19146741, EPI_ISL_19146763, EPI_ISL_19146765 the sample from Canada has also S:S31del DeFLiRT (Query: G26648A,del21653_21655, T22928C)

Tree:

Screenshot 2024-05-24 alle 18 13 53 Screenshot 2024-05-24 alle 18 13 53

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_28521_bc570.json?c=gt-S_456&label=id:node_6978463

FedeGueli commented 1 month ago

Designated LM.1 via https://github.com/cov-lineages/pango-designation/commit/26a96eddfe8a85c62ffec4ea2fc02e3d64ef80c0

FedeGueli commented 1 week ago

closing this