JN.1+S:L176F+S:F456L with C18894T branch (33 seqs, 11 countries)

cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme

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JN.1+S:L176F+S:F456L with C18894T branch (33 seqs, 11 countries) #2632

Closed DailyCovidCases closed 1 week ago

DailyCovidCases commented 1 month ago

From branch 41 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253 JN.1+S:L176F+S:F456L, Query: C22088T,C18894T,T22928C,-17562 No. of seqs: 33 (Australia 1 Canada 2 China 6 Franch 2 Germany 2 Nepal 1 New Zealand 2 South Korea 5 Thailand 1 UK 1 USA 10) First: EPI_ISL_18982793, 2024-2-14 Latest: EPI_ISL_19167486, 2024-5-20 usher Screenshot (94)

FedeGueli commented 2 weeks ago

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice2_genome_test_204d2_ffa5d0.json?c=userOrOld&label=id:node_7163602

Not monophyletic close it , it is just 14-16 sequences in reality not worth to be proposed

Anyway this the correct query:

C22088T,C18894T,T22928C,-17562,-G24872T,-A7888T,-C1762A,-C875T,-G4162A,-G1729A,-A24727T