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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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KP.1.1+Orf1b:L2213F+S:N185del, F186I(186 seqs, 23 countries) #2649

Open aviczhl2 opened 3 weeks ago

aviczhl2 commented 3 weeks ago

From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1509

Other than KP.1.1.1(S:K182N), other seqs on the Orf1b:L2213F branch of KP.1.1 have another NTD mutation set that usher doesn't display.

KP.1.1+C20104T(Orf1b:L2213F)+del22115_22117,T22118A(S:N185-, F186I)

GISAID query: T22926C,C7113T,T22118A No. of seqs: 117(Australia 1 Canada 10 Denmark 2 UK 35 France 14 Germany 1 India 2 Ireland 1 Japan 12 Nepal 2 South Korea 1 Singapore 7 Spain 5 Thailand 1 USA 20(2 from Qatar, 2 from France, 1 from India, 1 from South Africa, 2 from UK))

usher

Usher doesn't display this deletion+mutation and simply put it next to KP.1.1.1. Most seqs on KP.1.1+Orf1b:L2213F branch that is not KP.1.1.1 are in this branch.

image

FedeGueli commented 2 weeks ago

136 now with 3 samples collected in June , 2 in Hubei. ping @corneliusroemer

aviczhl2 commented 1 week ago

167, Netherlands, China, Portugal, Malaysia, New Zealand

aviczhl2 commented 9 hours ago

186, Iceland