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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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JN.1.18.2 (59S) Flirt lineage with Orf10:Q29* (18 seqs 4 continents) #2653

Open FedeGueli opened 2 weeks ago

FedeGueli commented 2 weeks ago

From Branch 147 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089

Defining mutations: JN.1.18.2 ( S:R346T+S:F59S) > Orf1a:K1226E (A3941G) > S:F456L (T22928C) > Orf10:Q29* (C29642T) Query: A3941G ,T22928C, T21738C Samples: 12 Countries: Hubei, Hong Kong Taiwan, Australia,New Zealand, England , US (Colorado) IDs: EPI_ISL_19145817, EPI_ISL_19150615, EPI_ISL_19164254, EPI_ISL_19164437, EPI_ISL_19179007, EPI_ISL_19179014, EPI_ISL_19179199, EPI_ISL_19186710, EPI_ISL_19186728, EPI_ISL_19187084, EPI_ISL_19187283, EPI_ISL_19193264,

Tree:

Screenshot 2024-06-14 alle 10 31 44

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_33207_bfc510.json?label=id:node_7142877

FedeGueli commented 7 hours ago

Likely dying off