search

cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
Other
1.04k stars 97 forks source link

JN.1+S:F456L possible dead branch #2660

Closed DailyCovidCases closed 1 month ago

DailyCovidCases commented 3 months ago

From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253 Branch 44: 10 seqs, last sample was on 19 April 2024 usher Branch 85: 5 seqs, last sample was on 6 May 2024 usher Branch 78: 4 seqs, last sample was on 20 May 2024 usher Branch 97: 4 seqs, last sample was on 15 May 2024 usher Branch 90: 5 seqs, last sample was on 30 April 2024 usher

FedeGueli commented 3 months ago

All corrected now please close this.

DailyCovidCases commented 3 months ago

Branch 76: 10 seqs, last sample was on 14 May 2024 usher Branch 89: 7 seqs, last sample was on 27 April 2024 usher Branch 88: 8 seqs, last sample was on 25 April 2024 usher Branch 53: 26 seqs, last sample was on 13 May 2024 usher Branch 16: 39 seqs, last sample was on 9 May 2024 usher Branch 79: 17 seqs, last sample was on 28 May 2024 usher

FedeGueli commented 3 months ago

Alll corrected but. Branch 79 is far from dead

FedeGueli commented 3 months ago

branch 89 not dead

FedeGueli commented 3 months ago

All corrected now , please close or transfer it to the secondary repo, Pango repo is not thought for this kind of issue.

Please read:https://github.com/cov-lineages/pango-designation/issues/1988

DailyCovidCases commented 3 months ago

Possible dead branch as of 6/23/2024: Branch 9: 89 seqs, last sample was on 27 May 2024 usher Branch 38: 13 seqs, last sample was on 11 May 2024 usher Branch 49: 19 seqs, last sample was on 24 May 2024 usher Branch 63: 21 seqs, last sample was on 24 April 2024 usher Branch 74: 23 seqs, last sample was on 13 May 2024 usher Branch 100: 16 seqs, last sample was on 1 May 2024 usher Branch 103: maybe it was only a small cluster, please close it

FedeGueli commented 3 months ago

done

DailyCovidCases commented 3 months ago

+) Possible dead branch as of 6/26/2024: Branch 104: 6 seqs, last sample was on 23 May 2024: usher Branch 82: 144 seqs, last sample was on 22 May 2024: usher Branch 70: 25 seqs, last sample was on 24 May 2024: usher Branch 58: 64 seqs, last sample was on 26 May 2024 usher Branch 25: 44 seqs usher +) Branches that worth be designated: Branch 7: 253 seqs with an interesting combo branch with S:T572I usher Branch 11: 316 seqs usher Branch 15: 175 seqs usher Branch 22: 47 seqs, last sample was on 27 May 2024 usher Branch 71: 54 seqs, last sample was on 3 June 2024: usher ping @corneliusroemer

FedeGueli commented 3 months ago

done

DailyCovidCases commented 2 months ago

Branch 21: 85 seqs, last sample was on 22 June 2024 usher Branch 36: 116 seqs, last sample was in June 2024: usher Branch 41: 16 seqs, last sample was on 22 June 2024 usher Branch 58: 77 seqs, last sample was on 27 June 2024: usher Branch 73: 20 seqs, last sample was on 2 July 2024 usher