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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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LF.3.1 with S:P>L1143F in USA (42) #2669

Closed FedeGueli closed 4 months ago

FedeGueli commented 4 months ago

@ryhisner spotted a big upload of this sublineage from Colorado yesterday i was wrongly tracking this as it was already LF.3.1.X Better proporosing here (originally in https://github.com/sars-cov-2-variants/lineage-proposals/issues/1558) LF.3.1 ( S:V>H445P) > C13860T > C10894T, C18888T, C20628T, S:P>L1143F ( C24989T) Query: C10894T, C18888T,T3565C Samples: 42 Countries: USA mainly Colorado Tree (by Ryan)

Screenshot 2024-06-28 alle 11 21 23

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_43ad9_e2c9f0.json IDs: EPI_ISL_19101709, EPI_ISL_19168073, EPI_ISL_19175945, EPI_ISL_19182879, EPI_ISL_19182909, EPI_ISL_19185752, EPI_ISL_19188815, EPI_ISL_19188998, EPI_ISL_19191292, EPI_ISL_19191821, EPI_ISL_19191823, EPI_ISL_19193242, EPI_ISL_19193258, EPI_ISL_19193296, EPI_ISL_19193311, EPI_ISL_19193369, EPI_ISL_19202814, EPI_ISL_19209647, EPI_ISL_19210857, EPI_ISL_19213583, EPI_ISL_19214478, EPI_ISL_19214480, EPI_ISL_19216263, EPI_ISL_19219859, EPI_ISL_19219868-19219870, EPI_ISL_19219877-19219881, EPI_ISL_19219883, EPI_ISL_19219885-19219890, EPI_ISL_19219894-19219895, EPI_ISL_19219900,

xz-keg commented 4 months ago

Designated LF.3.1.1

FedeGueli commented 4 months ago

Designated LF.3.1.1 via https://github.com/cov-lineages/pango-designation/commit/b0a4a61f6bbc49802b3e644a3117e48fb0426372