search

cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
Other
1.05k stars 98 forks source link

KP.3.1 subbranch with S:L84I(61 seqs, 9 countries) #2709

Closed Over-There-Is closed 3 months ago

Over-There-Is commented 4 months ago

This lineage is already proposed by @aviczhl2 in sars-cov-2-variants/lineage-proposals#1709. Query: G15372T, A19722G, C21812A (host: human)

Earliest sequence: 05-11 Virginia ,USA (imported from Austria) EPI_ISL_19162555 Latest sequence: 07-22 Denmark EPI_ISL_19299842 Regions detected: UK 20, US 20(1 from Austria, 1 from Turkey), Canada 10, Ireland 5, France 3, Denmark 2, Italy 1

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_2ab39_c39010.json?c=country&label=id:node_7030430 image

Sequences: EPI_ISL_19162555-19162556, EPI_ISL_19184769, EPI_ISL_19189107, EPI_ISL_19191343, EPI_ISL_19191513, EPI_ISL_19192434, EPI_ISL_19205540, EPI_ISL_19216232, EPI_ISL_19223650, EPI_ISL_19224103, EPI_ISL_19228970, EPI_ISL_19228993, EPI_ISL_19230643, EPI_ISL_19232330, EPI_ISL_19239407, EPI_ISL_19240284-19240285, EPI_ISL_19253131, EPI_ISL_19257068, EPI_ISL_19257107, EPI_ISL_19258529, EPI_ISL_19258591, EPI_ISL_19260267, EPI_ISL_19260868, EPI_ISL_19261233, EPI_ISL_19261558, EPI_ISL_19265447, EPI_ISL_19265638, EPI_ISL_19267221, EPI_ISL_19269410, EPI_ISL_19269903, EPI_ISL_19270126, EPI_ISL_19270729, EPI_ISL_19271532, EPI_ISL_19272124, EPI_ISL_19272162, EPI_ISL_19276428, EPI_ISL_19276439, EPI_ISL_19281701, EPI_ISL_19282056, EPI_ISL_19282348, EPI_ISL_19284070, EPI_ISL_19285030, EPI_ISL_19285110, EPI_ISL_19285186, EPI_ISL_19285202, EPI_ISL_19285693, EPI_ISL_19286579, EPI_ISL_19288034, EPI_ISL_19288043, EPI_ISL_19288172, EPI_ISL_19289503, EPI_ISL_19290145, EPI_ISL_19294375, EPI_ISL_19294417, EPI_ISL_19294441, EPI_ISL_19294883, EPI_ISL_19298912, EPI_ISL_19299842, EPI_ISL_19303234
xz-keg commented 4 months ago

Transfered from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1709

Over-There-Is commented 4 months ago

Mis operated. I didn't notice it's the main repo here. I'm trying to propose this on the preproposal repo, and didn't find it was already proposed by @aviczhl2.

xz-keg commented 4 months ago

Mis operated. I didn't notice it's the main repo here. I'm trying to propose this on the preproposal repo, and didn't find it was already proposed by @aviczhl2.

You can transfer that here.

FedeGueli commented 3 months ago

KP.3.1.7

FedeGueli commented 3 months ago

There is a subbranch of this with S:P384S counting 18 all recent but all from New Brunswick, Canada, very likely a cluster Query: G15372T, A19722G, C21812A, C22712T

DailyCovidCases commented 1 month ago

242 seqs now: usher https://cov-spectrum.org/explore/World/AllSamples/Y2024/variants?nextcladePangoLineage=KP.3.1.7*& Screenshot (250)

FedeGueli commented 1 month ago

242 seqs now: usher https://cov-spectrum.org/explore/World/AllSamples/Y2024/variants?nextcladePangoLineage=KP.3.1.7*& Screenshot (250)

it is alreadat KP.3.1.7