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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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KP.2+S:F32del (93 seqs, 10 countries, 27% Ecuador, 6 with S:I101T) #2715

Open aviczhl2 opened 1 month ago

aviczhl2 commented 1 month ago

From branch 2 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1768

There is a new way to form DeFLiRT via S:F32del.

KP.2+T22795G+T24637G+del21656_21658(S:F32del)

GISAID query: T24637G, del21656_21658 Query for dropout sequences: 1:C16887T, G17334T, -T24637G, del21656_21658 2:T22795G, -del21656_21658, T24637G @Over-There-Is

GISAID query for S:I101T branch: T24637G, del21656_21658,T21864C No. of seqs: 21(Czech Republic 1 Dominician Republic 1 Ecuador 12 Spain 1 USA 6(1 from Ecuador 1 from EI Salvador))

First: EPI_ISL_19238242, 2024-5-30, Czech Republic Latest: EPI_ISL_19307626, 2024-7-21, USA from Ecuador

It is 8/30 of Ecuador samples collected after 2024-7-1.

usher image As can be seen, almost every seq under the T24637G branch has S:F32del.

aviczhl2 commented 1 month ago

24, 1 more from GBW from Brazil

aviczhl2 commented 1 month ago

+2 GBW from Colombia

FedeGueli commented 3 weeks ago

34 +6 Ecuador today

aviczhl2 commented 3 weeks ago

Massive upload from Ecuador, 52 now

aviczhl2 commented 2 weeks ago

59, detected in UK and Canada, more GBW from Ecuador

aviczhl2 commented 2 weeks ago

There seems to be a new N-Glycan mutation S:I101T branch formed under this branch,

aviczhl2 commented 5 days ago

93 after adding supplementary queries from @Over-There-Is

Over-There-Is commented 4 days ago

most with C16887T, which is masked by usher.

FedeGueli commented 4 days ago

7 with I101T now