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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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JN.1+S:F456L+Orf1a:Y1734H,S:S60P starting and still circulating in Vietnam(45 seqs, 9 countries with two S:T572I branches 8 and 6 seqs ) #2745

Open aviczhl2 opened 3 weeks ago

aviczhl2 commented 3 weeks ago

From branch 110 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253

Like LF.8, this is another lineage messed up by inaccurate proposals of DailyCovidCases. As it clearly emerges in undersampled regions and is still growing, re-propose it according to the updated usher tree.

JN.1+C19374T+T22928C(S:F456L)+C9988T+T5465C,T21740C(S:S60P,Orf1a:Y1734H)

GISAID query: C9988T,T21740C,C19374T No. of seqs: 34(Australia 1 Canada 11 France 1 South Korea 7 China 1 USA 13(2 from Vietnam))

First: EPI_ISL_19191562, USA from Vietnam, 2024-5-20 Latest: EPI_ISL_19352622, South Korea, 2024-7-29

GISAID query for S:T572I, Orf1a:V1071I branch:A1732G,G3476A,C23277T (7 seqs) GISAID query for S:T572I, S680P branch: C23277T,T23600C, C9988T (4 seqs)

usher image

FedeGueli commented 3 weeks ago

Thx for rescuing it.

aviczhl2 commented 1 week ago

45, Japan (1 local and 2 from Vietnam)

DailyCovidCases commented 3 days ago

ping @corneliusroemer worth a designation this one