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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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KP.1.1+S:S71Y,S31del or JN.1.11.1/LP.2 recombinant(49 seqs, 11 countries) #2747

Open aviczhl2 opened 3 weeks ago

aviczhl2 commented 3 weeks ago

KP.1.1+C21774A,del21653_21655(S:S71Y, S31del)

This is another re-proposal due to inaccurate proposal by DailyCovidCases.

From branch 34 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502

This can also be explained as JN.1.11.1/LP.2 recombinant with breakpoint between 20595 and 21652 (no private mutation needed)

GISAID query: A24819G, del21770_21775, del21653_21655, -4999 Supplementary Query 1: A24819G, C21774A, -4999 Supplementary Query 2: C1263T,T11551C,C20823T, -C21774A,-del21770 No. of seqs: 33(China 2 Japan 1 Malaysia 5 Singapore 10 South Korea 3 USA 12(2 from India))

First: EPI_ISL_19095593, 2024-4-1,Singapore Latest: EPI_ISL_19351788, 2024-8-5, Malaysia

usher image

FedeGueli commented 3 weeks ago

there is a typo it is S:S71Y!

Over-There-Is commented 2 weeks ago

A24819G, del21770_21775, -4999=33 A24819G, C21774A, -4999=8 maybe there are at least 41 sequences.

Over-There-Is commented 2 weeks ago

C1263T,T11551C,C20823T, -C21774A, -del21770_21775=1 this sequence seems belonging to this branch too

aviczhl2 commented 2 weeks ago

Add two supplementary queries that capture the Slovenia and Phillipines sample. Total shall be 42.

aviczhl2 commented 6 days ago

48, UK

aviczhl2 commented 1 day ago

+1 Denmark