cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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New KP.3.2 + S:S31del emerged recently (44, 10 places, first sampled in India) #2784

Open FedeGueli opened 1 week ago

FedeGueli commented 1 week ago

Originally posted in https://github.com/sars-cov-2-variants/lineage-proposals/issues/2081

There is a another recent DeFluQe branch that seems expanding recently KP.3.2 >> C18981T > C21590T > S:S31del (del21653-55), C14790T then C23086T (not present in all samples) Query: C18981T, T3565C,C14790T Samples: 34 Places: 7 First sample collected on 2024-07-10 in a traveler from India (GBW)

Tree:

Screenshot 2024-09-23 alle 14 28 23

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_c560_15cb80.json?branchLabel=nuc%20mutations&label=id:node_7082742

Samples: EPI_ISL_19279964, EPI_ISL_19312927, EPI_ISL_19318422, EPI_ISL_19331311, EPI_ISL_19353260, EPI_ISL_19359729, EPI_ISL_19359746, EPI_ISL_19359766, EPI_ISL_19359775, EPI_ISL_19359777, EPI_ISL_19359784, EPI_ISL_19366206, EPI_ISL_19372984, EPI_ISL_19375523, EPI_ISL_19375612, EPI_ISL_19375655, EPI_ISL_19380301, EPI_ISL_19383907, EPI_ISL_19384424, EPI_ISL_19384427, EPI_ISL_19384439, EPI_ISL_19391428, EPI_ISL_19416884, EPI_ISL_19418948, EPI_ISL_19418962, EPI_ISL_19420706, EPI_ISL_19420778, EPI_ISL_19427800, EPI_ISL_19427848, EPI_ISL_19427923, EPI_ISL_19427928, EPI_ISL_19427931, EPI_ISL_19431372, EPI_ISL_19431637, EPI_ISL_19432460

FedeGueli commented 1 week ago

+2 Sweden

FedeGueli commented 3 days ago

41 new countries Australia, France ping @corneliusroemer this is interesting

FedeGueli commented 1 day ago

44 , Denmark