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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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MC.1 subbranch with S:A942S (51 seqs, 12 countries) #2794

Open Over-There-Is opened 5 days ago

Over-There-Is commented 5 days ago

Transferred from sars-cov-2-variants/lineage-proposals#1932. MC.1> C13297T> C14220T> G24386T(S:A942S) Query: C8293T, C13297T, G24386T

Earliest sequence: 07-16 California, US (from Serbia) EPI_ISL_19289846 Latest sequence: 09-18 Kobe City, Hyogo Prefecture, Japan EPI_ISL_19437550 Regions detected: France 9(ARA 7, GES 1, HDF 1), Ireland 9(Limerick 6, Galway 3), Spain 4(Catalunya), Denmark 2, Germany 2(Bayern 1, Berlin 1), UK 2(Scotland), Sweden 1(Stockholm); US 8(California 2[1 from Serbia], NY 2, Massachusetts 1, Arizona 1 not on GISAID, Ohio 1, Utah 1), Canada 3(BC 2, Alberta 1); Australia 8(SA); Japan 3(Kanagawa 1, Tokyo 1, Hyogo 1).

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_44a54_8eaa30.json?c=country&label=id:node_7209860 image

Sequences: EPI_ISL_19289846, EPI_ISL_19308141, EPI_ISL_19312018, EPI_ISL_19316977, EPI_ISL_19327643, EPI_ISL_19337445, EPI_ISL_19338901, EPI_ISL_19357447-19357448, EPI_ISL_19357491, EPI_ISL_19357504, EPI_ISL_19361195, EPI_ISL_19365422, EPI_ISL_19371410, EPI_ISL_19372299, EPI_ISL_19372301, EPI_ISL_19372977, EPI_ISL_19374161, EPI_ISL_19389107, EPI_ISL_19390689, EPI_ISL_19391164, EPI_ISL_19394788, EPI_ISL_19408922, EPI_ISL_19409100, EPI_ISL_19409781, EPI_ISL_19415666, EPI_ISL_19420948, EPI_ISL_19423370, EPI_ISL_19425667, EPI_ISL_19429203, EPI_ISL_19430551, EPI_ISL_19433899-19433902, EPI_ISL_19433906, EPI_ISL_19434283, EPI_ISL_19434310, EPI_ISL_19434317, EPI_ISL_19434321, EPI_ISL_19434329, EPI_ISL_19434332, EPI_ISL_19434346, EPI_ISL_19434350, EPI_ISL_19437550, EPI_ISL_19437753, EPI_ISL_19441241, EPI_ISL_19441323, EPI_ISL_19441338, EPI_ISL_19443887, PQ387847.1
FedeGueli commented 1 day ago

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