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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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LY.1 + ORF1a:S1189R (277 mostly Texas USA) #2795

Open Fearuncle opened 1 month ago

Fearuncle commented 1 month ago

from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1983 image tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_293f5_c2b4d0.json?f_userOrOld=uploaded%20sample

First seq: 2024-06-09 Most Recent: 2024-09-11

Gisaid Query: !C6384T & C3832A & T20367C

DailyCovidCases commented 1 month ago

Please designate this branch @corneliusroemer

FedeGueli commented 1 month ago

Please designate this branch @corneliusroemer

still very local, it just entered some Canadian cluster hence showing advantage

DailyCovidCases commented 6 days ago

Now 238 seqs Source: https://cov-spectrum.org/explore/World/AllSamples/Y2024/variants?variantQuery=%21C6384T+%26+C3832A+%26+T20367C&

FedeGueli commented 6 days ago

Now 238 seqs 246 with -C6384T,C3832A, T20367C , 31/246 sampled in October but mainly in Canadian clusters

DailyCovidCases commented 3 days ago

246 seqs @corneliusroemer rapid designation needed: Screenshot (90)

FedeGueli commented 3 days ago

58 Aus, US , Can wrong issue