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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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KP.3.1.1 plus S:A435S (31 seqs, > 10 Places, 4 continents) #2798

Open FedeGueli opened 1 week ago

FedeGueli commented 1 week ago

S:A435S is one of the few convergent RBD mutations appearing after FLirt/FViRT and 493E , together with 478X and 445X

And the still undesignated MC.10 branch appears to be fast and to be not far from XEC, This is the other KP.3.1.1 branch with it formerly tracked in https://github.com/sars-cov-2-variants/lineage-proposals/issues/2077: it appears to be very recent it would be good to designate both of them

KP.3.1.1 > C829T > C12076T > S:A435S (G22865T) Query: C829T, C12076T ,G22865T Samples: 20 Places: 11 (Australia- 2 states, NZL, Singapore,Japan, France- 3 regions, Portugal, Netherlands, Sweden, US, England, Denmark,) First collected on 2024-07-07 in Vermont, US Tree:

Screenshot 2024-10-06 alle 15 37 23

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_5fad8_291a50.json?label=id:node_7205213

Interestingly the tree seems split in two main branches one expanding from Oceania, the other from Europe w C14925T

FedeGueli commented 1 week ago

24

FedeGueli commented 5 days ago

31 Australia France (Batch)