Repository for suggesting new lineages that should be added to the current scheme
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KP.4.1 got Deflirt and it is still circulating in three continents in September (70, 14 places including Iraq) with a recent minibranch adding S:T22N (2, Australia, QLD) #2800
This went unnoticed ( or we confounded it with KP.4.1.3) maybe due the fact Usher puts it under S:S31F but instead all the sequences have S:S31del.
It managed to fly under the radar until September when it was samples 5 times from three continents (Australia, France, Spain, Florida)
Interestingly it is converging now toward S:T22N with a mini branch sampled in Australia in September
KP.4.1 > S:S31del (del21653-55)
Query: G26918A,del21653,T3565C
Samples: 62
Countries: 14 countries including Iraq
Query for S:T22N subbranch:T7061C, C7482T, G19656A
Tree:
FedeGueli
commented
5 days ago
Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/2128
This went unnoticed ( or we confounded it with KP.4.1.3) maybe due the fact Usher puts it under S:S31F but instead all the sequences have S:S31del. It managed to fly under the radar until September when it was samples 5 times from three continents (Australia, France, Spain, Florida) Interestingly it is converging now toward S:T22N with a mini branch sampled in Australia in September
KP.4.1 > S:S31del (del21653-55) Query: G26918A,del21653,T3565C Samples: 62 Countries: 14 countries including Iraq Query for S:T22N subbranch:T7061C, C7482T, G19656A Tree:
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_16eb4_416c90.json?label=id:node_7190898