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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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KP.3.1.1+S:F186S(79 seqs, >10 places) #2801

Open xz-keg opened 1 month ago

xz-keg commented 1 month ago

From https://github.com/sars-cov-2-variants/lineage-proposals/issues/2084

Recently I train a GPT model on viral evolution for SARS-Cov-2 using data up to early-JN.1, and T22119C-S:F186S is its top prediction when inferenced on KP.3.1.1-backbone. Now there's really a S:F186S sub-branch emerging.

KP.3.1.1+T22119C(S:F186S)

GISAID query: T22119C, A13121T, -25595, -28612, -6536 No. of seqs: 53(Ireland 14 Portugal 4 UK 9(Scotland) Slovenia 1 Spain 8 Sweden 11 USA 7(AK,NY,UT, GBW from UK))

First: EPI_ISL_19296890, Spain, 2024-5-22 Latest: EPI_ISL_19451861, GBW from UK, 2024-9-22

usher image

FedeGueli commented 1 month ago

58 France Ireland

xz-keg commented 1 month ago

60, Italy

FedeGueli commented 1 month ago

One of the fastest Kp.3.1.1 descendants , along with 435S D111N and 572I one of the few beneficial spike mutations for Kp.3.1.1

xz-keg commented 1 month ago

64, Canary Islands

FedeGueli commented 1 week ago

seems faster now