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cov-lineages / pango-designation

Repository for suggesting new lineages that should be added to the current scheme
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XEC+Orf1a:A599T+S:T572I(24 seqs, >10 places) #2803

Open xz-keg opened 1 week ago

xz-keg commented 1 week ago

S:T572I is the top mutation predicted by the mutation GPT on XEC backbone, and there are really multiple S:T572I lineages emerging.

From https://github.com/sars-cov-2-variants/lineage-proposals/issues/2087 XEC+G2060A(Orf1a:A599T)+C23277T(S:T572I)

GISAID query: G2060A, C23277T,C18657T,-14106,-G2272A,-24034 (may include more -s as convergent going on) No. of seqs: 18(Australia 10(SA,QLD,NSW), Netherlands 1 Italy 1 Spain 1 Sweden 2 UK 1 USA 2(GBW from New Zealand))

First: EPI_ISL_19448172, Italy, 2024-8-25 Latest: EPI_ISL_19472822, USA from New Zealand, 2024-9-30

usher

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FedeGueli commented 1 week ago

One of the fastest lets see what it will do outside Australia

FedeGueli commented 5 days ago

20 with G2060A, C23277T,C18657T,-14106,-G2272A but one sample is ENV/Germany and it seems a mix of multiple lineages

FedeGueli commented 3 days ago

20 Netherlands

xz-keg commented 2 days ago

+2 Australia-WA

FedeGueli commented 1 day ago

tenth sample was from California