Proposal of a Chilean Sublineage with Orf1a:P820L belonging to the large undesignated branch with Orf7a:P45L - Githubissues

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Repository for suggesting new lineages that should be added to the current scheme

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Proposal of a Chilean Sublineage with Orf1a:P820L belonging to the large undesignated branch with Orf7a:P45L #308

Closed FedeGueli closed 2 years ago

FedeGueli commented 3 years ago

I spotted a sublineage within the still undesignated branch with Orf7a:P45L ( issue #268 ) This sublineage has G20937T then Orf1a:P820L and it is currently circulating in Chile (244seq, around 10% ) Total sequences: 587 First sequences : Germany 23/2021 Last sequences 52/2021 Chile Italy 42/2021

Chile proportions in the last weeks: VariantTimeDistributionChart https://cov-spectrum.ethz.ch/explore/Chile/AllSamples/Y2021/variants?aaMutations=Orf1a%3AP820L&nucMutations=G20937T&pangoLineage=B.1.617.2*

Tree: (Neherlab SA-Brazil) https://nextstrain.org/groups/neherlab/ncov/sa-brazil?branchLabel=aa&c=gt-ORF1a_820&p=grid&r=division&tl=pango_usher Schermata 2021-11-07 alle 01 13 38

thx to @zach-hensel for highlighting my big mistake assigning it to AY.43.

FedeGueli commented 2 years ago

The parental lineage has now been designated AY.122 in #320 , So i'll close this issue . aif some relevant news will come from this one i'll reopen it.