Closed corneliusroemer closed 2 years ago
Thanks for submitting. We've added lineage BA.2.43 with 25 newly designated sequences, and 0 updated designations. Defining mutation(s) A2568G (ORF1a:Q768R), T22674A (S:F371Y), G25166C (S:E1202Q).
Hi @corneliusroemer i was noticing that nextclade (the nextclade option on covspectrum) dont recognize any BA.2.43 sequence, is this the right place to highlight this? https://cov-spectrum.org/explore/India/AllSamples/Past3M/variants?pangoLineage=BA.2.43*&pangoLineage1=BA.2.43*&
Noticed this lineage as it was growing in Belgium and had an interesting mutation: BA.2 S:S371F has mutated further to S:371F (C22674 from T->A).
It seems most common in India, where it's been detected in a lot of states. Elsewhere, it's most common in Belgium at around 1%. But it's been detected in a lot of places.
Detections in India:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice3_genome_32723_8220b0.json?label=nuc%20mutations:C18086T
https://cov-spectrum.org/explore/India/AllSamples/Past3M/variants/international-comparison?aaMutations=S%3AS371Y%2CORF1a%3A768R%2CS%3A1202Q&pangoLineage=BA.2*&pangoLineage1=BA.2*&