Closed sanschiffre closed 2 years ago
Good catch @sanschiffre! I think it should be India/RJ-SMS-ICMR-INSACOG-TS-11440/2022 (EPI_ISL_10924169) instead of India/RJ-SMS-ICMR-INSACOG-TS-11049/2022 -- I suspect that was a copy-paste error in the original post for #522, where the tree screenshot shows RJ-SMS-ICMR-INSACOG-TS-11440 but the table of samples has -11049.
Chris is on holiday so I will make that change in lineages.csv.
Lineages.csv containt 7 XU samples :
But when you analysed them with Sc2rf, you can see that they are two differents lineages : India/RJ-SMS-ICMR-INSACOG-TS-11049/2022 has a breakpoint between 12880 and 13195 The six others have their breakpoint between 5386 and 8393