B.1.1.397 scoring metrics

cov-lineages / pangoLEARN

Store of the trained model for pangolin to access.

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B.1.1.397 scoring metrics #20

Closed victormaricato closed 3 years ago

victormaricato commented 3 years ago

Are the metrics for B.1.1.397 available anywhere?

Tried to find it in the report, however, I couldn't.

Plus, the sample where B.1.1.397 was found in my dataset is actually assigned as P.1 in the Usher model and is definitely within other P.1's in their Phylogenetic Tree, which is why I am looking for the pangoLEARN metrics on this specific variant.

rmcolq commented 3 years ago

That file is not currently maintained, so will not feature any of the more recent lineages. This is an old issue now, and I suspect any misclassification has been resolved by the latest pangoLEARN data release. The pangoLEARN/data/decision_tree_rules.zip is the file which has information in about decisions made within pangoLEARN for each lineage.