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cov-lineages / pangolin-data

Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
GNU General Public License v3.0
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Assignment of KR.2 instead of LT.1 #60

Open Xhyn-Yus opened 1 week ago

Xhyn-Yus commented 1 week ago

According to pangolin-designation v1.28, KR.2 has been redesignated as LT.1, however, pangolin-data v1.28 still assigns KR.2 instead of LT.1

AngieHinrichs commented 1 week ago

Well, that is a bug. Thank you for reporting it! I will make a v1.28.1 data release. [heads up @kapsakcj]

AngieHinrichs commented 1 week ago

Thanks again @Xhyn-Yus for reporting this. It is fixed in pangolin-data release v1.28.1.

[The problem was that I needed to modify three files in my daily tree update process to replace KR.2 with LT.1, but I only updated two of them and forgot about the third. As a result, LT.1 was added at the correct location, but the KR.2 annotation snuck back in on a child branch of LT.1, and the majority of LT.1 sequences are on that child branch. I will add some checks to make sure that lineages that don't belong in the tree have truly been removed.]