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cov-lineages / pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.
GNU General Public License v3.0
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install pangolin #463

Closed jeansaplische closed 2 years ago

jeansaplische commented 2 years ago

Good afternoon, I'm from Brazil I'm trying to install pangolin in conda and it's giving the following error below. please someone help?

(pangolin) PS C:\Users\Pokemaster> conda install -c bioconda -c conda-forge -c defaults pangolin Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: | Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. Examining @/win-64::__archspec==1=x86_64: 80%|█████████████████████████████████▌ | 4/5 [00:00<00:00, 5.53it/s]- \failed

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

aineniamh commented 2 years ago

Hi @jeansaplische, do you have a current installation of pangolin that may be conflicting? I'll be honest, I'm not very familiar with windows installation!

rpetit3 commented 2 years ago

Hi @jeansaplische,

If possible I'd recommend installing Windows Subsystem Linux, because Bioconda only builds packages for Linux and MacOS specifically. There are some packages that will work from Bioconda on Windows, but many will not.

jeansaplische commented 2 years ago

I don't have a conflicting Pangolin installation. The computer's operating system is Windows 10. I installed Anaconda 3 inside win10 and I'm trying to install Pangolin inside Anaconda 3. I will do the installation test with Windows Subsystem Linux.

aineniamh commented 2 years ago

Hope this alternative approach worked. Will close the issue now but if you're still encountering install issues happy to reopen.

Áine