"Check your environment, didn't find appropriate files from the pangoLEARN repo. Trained model must be installed, please see https://cov-lineages.org/pangolin.html for installation instructions."

[nonononanana]

I have followed instuctions regarding pangoLEARN https://cov-lineages.org/resources/pangolin/pangolearn.html, and installed pango-data https://github.com/cov-lineages/pangolin-data, but the error still remains.

Check your environment, didn't find appropriate files from the pangoLEARN repo. Trained model must be installed, please see https://cov-lineages.org/pangolin.html for installation instructions

It will be greatly appreciated if anyone could kindly help.

[aineniamh]

What version of pangolin are you running?

Did you follow the install instructions here: https://cov-lineages.org/resources/pangolin/installation.html

[nonononanana]

Thank you so much for your timely reply! Here are the version information given by conda.

pangolin 4.1.2 pypi_0 pypi pangolin-data 1.14 pypi_0 pypi

Yes I followed the instructions. First I tried to install from the github repo but it wasn't successful, so I turned to using bioconda. I suspect this caused some problems.

[nonononanana]

Hey I just tried to reinstall pangolin with bioconda in a new docker, and the same error occurred. Shall I somehow fix the pangoLEARN?

[aineniamh]

I'm not sure what installing in a docker will do to the install. I'd suggest either just install the docker image for pangolin, or else install with bioconda, it sounds like you might be currently attempting a mixture of both.

[aineniamh]

Just checking in if you managed to get it to run?

[aineniamh]

Going to close this as it's a stale issue. Will reopen if needed.