cov-lineages / pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.
GNU General Public License v3.0
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Add entries for pangolin-data/-assignment 1.23 #532

Closed AngieHinrichs closed 11 months ago

AngieHinrichs commented 11 months ago

pangolin-data and pangolin-assignment v1.23 have been released, so this is a routine update to pangolin's list of data compatiblities.

Note: Currently the pangolin test is failing because the v1.23 pangolin-data tree provokes a corner-case bug in usher-sampled (<= v0.6.2) that affects lineage A sequences like outgroup_A in pangolin/test/test_seqs.fasta. The test failure has nothing to do with this PR. Hopefully usher v0.6.3 will be released soon, and that should fix the pangolin test failure.