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cov-lineages
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scorpio
serious constellations of reoccurring phylogenetically-independent origin
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Merge in dev
#14
Closed
rmcolq
closed
3 years ago
rmcolq
commented
3 years ago
Pulls in
mrca_lineage
field from JSON files, checks it's not got weird characters and outputs it during classify
Handles deletions specified in AA space in AA space
Adds pangolin mode which disregards anything in constellations/data for robustness
Allows label to be specified on command line and uses that field for call where possible (not included in comparison if not provided)
mrca_lineage
field from JSON files, checks it's not got weird characters and outputs it during classify