pwrose
commented
3 years ago Works now with the latest version of ipycytoscape.
Closed pwrose closed 3 years ago
pwrose
commented
3 years ago Works now with the latest version of ipycytoscape.
Failed to build ipycytoscape Pip subprocess error: Running command git clone -q https://github.com/pwrose/ipycytoscape.git /tmp/pip-req-build-_8vpzekr ERROR: Command errored out with exit status 1: command: /srv/conda/envs/notebook/bin/python /srv/conda/envs/notebook/lib/python3.7/site-packages/pip/_vendor/pep517/_in_process.py build_wheel /tmp/tmpdkkmg4qe cwd: /tmp/pip-req-build-_8vpzekr Complete output (122 lines): running bdist_wheel running jsdeps Installing build dependencies with npm. This may take a while...
added 1246 packages, and audited 1313 packages in 44s
21 vulnerabilities (13 low, 5 moderate, 3 high)
To address issues that do not require attention, run: npm audit fix
To address all issues (including breaking changes), run: npm audit fix --force
Run
npm auditfor details. npm notice npm notice New minor version of npm available! 7.0.8 -> 7.11.0 npm notice Changelog: https://github.com/npm/cli/releases/tag/v7.11.0 npm notice Runnpm install -g npm@7.11.0to update! npm noticeTraceback (most recent call last): File "/tmp/pip-build-env-lgjks042/overlay/bin/jupyter-labextension", line 5, in
from jupyterlab.labextensions import main
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/jupyterlab/init.py", line 7, in
from .labapp import LabApp
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/jupyterlab/labapp.py", line 14, in
from jupyter_server._version import version_info as jpserver_version_info
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/jupyter_server/init.py", line 15, in
from ._version import version_info, version
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/jupyter_server/_version.py", line 5, in
from jupyter_packaging import get_version_info
ImportError: cannot import name 'get_version_info' from 'jupyter_packaging' (/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/jupyter_packaging/init.py)
npm ERR! code 1
npm ERR! path /tmp/pip-req-build-_8vpzekr
npm ERR! command failed
npm ERR! command sh -c npm run clean:labextension && jupyter labextension build .
npm ERR! A complete log of this run can be found in: npm ERR! /home/jovyan/.npm/_logs/2021-04-23T07_57_47_862Z-debug.log npm ERR! code 1 npm ERR! path /tmp/pip-req-build-_8vpzekr npm ERR! command failed npm ERR! command sh -c npm run build:labextension && npm run build:nbextension
npm ERR! A complete log of this run can be found in: npm ERR! /home/jovyan/.npm/_logs/2021-04-23T07_57_47_889Z-debug.log npm notice npm notice New minor version of npm available! 7.0.8 -> 7.11.0 npm notice Changelog: https://github.com/npm/cli/releases/tag/v7.11.0 npm notice Run
npm install -g npm@7.11.0to update! npm notice npm ERR! code 1 npm ERR! path /tmp/pip-req-build-_8vpzekr npm ERR! command failed npm ERR! command sh -c npm run build:lib && npm run build:allnpm ERR! A complete log of this run can be found in: npm ERR! /home/jovyan/.npm/_logs/2021-04-23T07_57_47_919Z-debug.log /tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/setuptools/dist.py:645: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead % (opt, underscore_opt)) Traceback (most recent call last): File "/srv/conda/envs/notebook/lib/python3.7/site-packages/pip/_vendor/pep517/_in_process.py", line 280, in
main()
File "/srv/conda/envs/notebook/lib/python3.7/site-packages/pip/_vendor/pep517/_in_process.py", line 263, in main
json_out['return_val'] = hook(hook_input['kwargs'])
File "/srv/conda/envs/notebook/lib/python3.7/site-packages/pip/_vendor/pep517/_in_process.py", line 205, in build_wheel
metadata_directory)
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/setuptools/build_meta.py", line 222, in build_wheel
wheel_directory, config_settings)
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/setuptools/build_meta.py", line 207, in _build_with_temp_dir
self.run_setup()
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/setuptools/build_meta.py", line 150, in run_setup
exec(compile(code, file, 'exec'), locals())
File "setup.py", line 123, in
setup( setup_args)
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/setuptools/init.py", line 153, in setup
return distutils.core.setup(attrs)
File "/srv/conda/envs/notebook/lib/python3.7/distutils/core.py", line 148, in setup
dist.run_commands()
File "/srv/conda/envs/notebook/lib/python3.7/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/srv/conda/envs/notebook/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/jupyter_packaging/setupbase.py", line 503, in run
[self.run_command(cmd) for cmd in cmds]
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/jupyter_packaging/setupbase.py", line 503, in
[self.run_command(cmd) for cmd in cmds]
File "/srv/conda/envs/notebook/lib/python3.7/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/srv/conda/envs/notebook/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/jupyter_packaging/setupbase.py", line 274, in run
c.run()
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/jupyter_packaging/setupbase.py", line 381, in run
run(npm_cmd + ['run', build_cmd], cwd=node_package)
File "/tmp/pip-build-env-lgjks042/overlay/lib/python3.7/site-packages/jupyter_packaging/setupbase.py", line 225, in run
return subprocess.check_call(cmd, kwargs)
File "/srv/conda/envs/notebook/lib/python3.7/subprocess.py", line 363, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/srv/conda/envs/notebook/bin/npm', 'run', 'build']' returned non-zero exit status 1.
ERROR: Failed building wheel for ipycytoscape ERROR: Could not build wheels for ipycytoscape which use PEP 517 and cannot be installed directly
CondaEnvException: Pip failed
4.0 pyhd8ed1ab_0 conda-forge/noarch 36 KB libgcc-ng 9.2.0 h24d8f2e_2 installed libgcc-ng 9.3.0 h2828fa1_19 conda-forge/linux-64 8 MB libgomp 9.2.0 h24d8f2e_2 installed libgomp 9.3.0 h2828fa1_19 conda-forge/linux-64 376 KB libstdcxx-ng 9.2.0 hdf63c60_2 installed libstdcxx-ng 9.3.0 h6de172a_19 conda-forge/linux-64 4 MB openssl 1.1.1g h516909a_0 installed openssl 1.1.1k h7f98852_0 conda-forge/linux-64 2 MB sqlite 3.32.3 hcee41ef_1 installed sqlite 3.35.5 h74cdb3f_0 conda-forge/linux-64 1 MB tornado 6.0.4 py37h8f50634_1 installed tornado 6.1 py37h5e8e339_1 conda-forge/linux-64 646 KB
Summary:
Install: 177 packages Upgrade: 9 packages
Total download: 544 MB
──────────────────────────────────────────────────────────────────────────────────────
time: 293.282 Removing intermediate container d26330eb3b1f The command '/bin/sh -c TIMEFORMAT='time: %3R' bash -c 'time mamba env update -p ${NB_PYTHON_PREFIX} -f "binder/environment.yml" && time mamba clean --all -f -y && mamba list -p ${NB_PYTHON_PREFIX} '' returned a non-zero code: 1