Out of memory error in 01c-CNCBVariant.ipynb

covid-19-net / covid-19-community

Community effort to build a Neo4j Knowledge Graph (KG) that links heterogeneous data about COVID-19

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Out of memory error in 01c-CNCBVariant.ipynb #377

Closed pwrose closed 3 years ago

pwrose commented 3 years ago

MemoryError Traceback (most recent call last)

in 1 unique_var = variations[['id', 'variantType', 'start', 'end', 'ref', 'alt', 'varia ntConsequence', 2 'proteinVariant', 'geneVariant', 'distance', 'proteinPosi tion', 'proteinAccession', ----> 3 'taxonomyId', 'referenceGenome']].copy()