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covidgraph / motherlode

Pipeline for running all dataloader scripts for covidgraph in a controlled manner.
https://covidgraph.org
MIT License
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Reactome pathway database [data source] #17

Open adeffur opened 4 years ago

adeffur commented 4 years ago

https://reactome.org/dev/graph-database

Reactome database for biological pathways. Extensively used in biology. Multiple species. The entire database is available as a neo4j db. Probably easy to integrate with CovidGraph?

mpreusse commented 4 years ago

Reactome is a fantastic datasource!

The Neo4j database is not really easy to integrate, it has a very complex datamodel (e.g. described here: https://graphdb-bio.com/projects-using-neo4j-1)

Basic data is included in CovidGraph already: (Gene)-[:MEMBER]-(:Pathway)