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covidgraph / motherlode

Pipeline for running all dataloader scripts for covidgraph in a controlled manner.
https://covidgraph.org
MIT License
3 stars 1 forks source link

Hetionet Data #28

Open Jiros opened 4 years ago

Jiros commented 4 years ago

Data Source

https://het.io/

Note

From Trello Pending List - https://trello.com/c/aBr0Ys7Z Hetionet data from Daniel Himmelstein

Script to load

Idempotent

Dependencies

None

drdiscover2020 commented 4 years ago

we (Helomics) are happy to pick up this ticket

drdiscover2020 commented 4 years ago

Actively working on this and should have data loader scripts ready early next week (April 20) for drugs, targets etc from hetionet

drdiscover2020 commented 4 years ago

Jamie - still can't seem to move this to "In progress" - any ideas? Or I could just create a new issue, link it to this and go from there

mpreusse commented 4 years ago

@Jiros Do you know how to handle the permissions on the GitHub issues? The owners should be able to move the issue. I don’t know if you need to be member of the organization.

Jiros commented 4 years ago

I'll investigate. I'm hoping to move to Zenhub but suspect it will still use the underlying github permissions.

mpreusse commented 4 years ago

@drdiscover2020 I added you to the GitHub organization and you should be able to move issues now. Sorry for the delay, we have to figure out how this works first 😄

Jiros commented 4 years ago

:) I was just going to reply that I added @drdiscover2020 to a team this morning too so should be doubly able to move issues now! I'll keep looking at the benefits of either approach so we can decide going forward.

drdiscover2020 commented 4 years ago

Bingo! that worked - many thanks to you both.

Sorry, we are Jira "junkies", at least from the perspective of managing and Agile dev process in terms of epics, issues etc. Are you thinking of a move to ZenHub?

best, Mark

On Thu, Apr 23, 2020 at 7:23 AM Jamie Munro notifications@github.com wrote:

:) I was just going to reply that I added @drdiscover2020 https://github.com/drdiscover2020 to a team this morning too so should be doubly able to move issues now! I'll keep looking at the benefits of either approach so we can decide going forward.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/covidgraph/documentation/issues/27#issuecomment-618345427, or unsubscribe https://github.com/notifications/unsubscribe-auth/APCRVFZVITEF4JSKXWANTRLROAQJRANCNFSM4LZH5GFQ .

Jiros commented 4 years ago

Hi Mark, glad that did the trick. And yes, that's the plan - have just created a separate issue to track this - we can continue the conversation there. https://github.com/covidgraph/documentation/issues/50

Jiros commented 3 years ago

@mpreusse to fork repo to CovidGraph organisation and take on Maintainer role in order to resolve data pipeline issues.