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cox-labs / CoxLab_Bug_Reporting

MaxQuant and Perseus Bug Reporting
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MaxDIA (tsv library) got stuck at 'DIA library search 1 Done.' #57

Open A-dealbata opened 10 months ago

A-dealbata commented 10 months ago

Describe the bug MaxDIA (tsv library) got stuck at DIA library search 1 Done. (for several hours), and cannot move to the next step. If I force MaxDIA to run DIA library search 2 or 3, there will be an 'error'. MaxQuant version is the test v.2.4.12.0 in WeChat.

To Reproduce Steps to reproduce the behavior:

  1. Go to 'Type', and Click on 'MaxDIA'.
  2. Go to 'Library Type', and Click on 'tsv'.
  3. Upload tsv file(s). --I upload part of our test tsv library file in the attachment.
  4. upload a raw file and a fasta file as usual. Then click 'start'.

Expected behavior Run through and get output.

Screenshots image image

Desktop (please complete the following information):

Additional context Also exists in lower versions. I am "youzi" in wechat group.

bi-MPIB commented 10 months ago

Thanks for the feedback, we are working on this issue now.

bi-MPIB commented 10 months ago

Could you please upload the fasta file and tsv file here? The fasta file used for MaxQuant run should be exactly the same as the one for generating the tsv file.

punching-samuel commented 4 months ago

I also have the same problem now, I run maxDIA on slurm cluster. The software MQ runs normally choosing standard mode to analysis DDA data on slurm cluster. If you need, I can also upload my mqpar.xml. My codes are like 'export LD_LIBRARY_PATH=.../MaxQuant_v2.4.14.0/bin:$LD_LIBRARY_PATH' 'mono $MQ ../mqpar.xml'

截屏2024-06-27 10 13 09 截屏2024-06-27 10 14 44
punching-samuel commented 4 months ago

I also have the same problem now, I run maxDIA on slurm cluster. The software MQ runs normally choosing standard mode to analysis DDA data on slurm cluster. If you need, I can also upload my mqpar.xml. My codes are like 'export LD_LIBRARY_PATH=.../MaxQuant_v2.4.14.0/bin:$LD_LIBRARY_PATH' 'mono $MQ ../mqpar.xml' 截屏2024-06-27 10 13 09 截屏2024-06-27 10 14 44

(mono) bash-4.2$ find ../maxquant/MaxQuant_v2.4.14.0 -name "xgboost" ../maxquant/MaxQuant_v2.4.14.0/bin/libxgboost.so ..e/maxquant/MaxQuant_v2.4.14.0/bin/xgboost.lib ../maxquant/MaxQuant_v2.4.14.0/bin/xgboost.dll

If there's no lacking of xgboost.dll, and I also add the MaxQuant_v2.4.14.0/bin:$LD_LIBRARY_PATH. I don't understand why the error? Hope someone can help solve the problem together.

best wishes.

punching-samuel commented 4 months ago

I have solved the problem that xgboost.dll not found after installing xgboost using conda.