PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF files with PhyloCSF and confidence scores.
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creating multiple sequence alignments for plants #14
I work on plants, which seem to be lacking with the precomputed MSAs available.
What software would you recommend for creating genome scale MSAs of plants ? I can think of pangenome software like PGGB and minigraph-cactus, and converting from odgi to MSA formats, but I don't know of other reliable non-graph based alternatives.
Hi,
I work on plants, which seem to be lacking with the precomputed MSAs available.
What software would you recommend for creating genome scale MSAs of plants ? I can think of pangenome software like PGGB and minigraph-cactus, and converting from odgi to MSA formats, but I don't know of other reliable non-graph based alternatives.
Thanks