PhyloCSF Tracks implementation using HMMs

cpockrandt / PhyloCSFpp

PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF files with PhyloCSF and confidence scores.

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PhyloCSF Tracks implementation using HMMs #2

Closed martin-steinegger closed 3 years ago

martin-steinegger commented 3 years ago

HMM to break regions into states (Viterbi) and compute its respective posterior probabilities (Forward/Backward)