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cpockrandt / genmap

GenMap - Fast and Exact Computation of Genome Mappability
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bed output not zero based #8

Closed cruckert closed 5 years ago

cruckert commented 5 years ago

When running genmap with -b option the output bed file contains lines like

1 17222 17222 - 0.333333 1 35758 35758 - 0.25

As in bed format start coordinates ares 0-based and end coordinates are 1-based even one bp intervals are represented by differing start and end coordinates, e.g.

1 17222 17223 G

cpockrandt commented 5 years ago

Thanks for reporting this bug! I accidentally used closed-intervals for bed-files. I already fixed the code and will upload new binaries later today!

cpockrandt commented 5 years ago

Binaries are now also released.