modify MakeParam to consider other sequencing plateform

cpouchon / ORTHOSKIM

ORTHOSKIM allows in silico capture of targeted sequences in genomic or transcriptomic libraries.

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modify MakeParam to consider other sequencing plateform #6

Closed cpouchon closed 5 years ago

cpouchon commented 5 years ago

/bettik/LECA/phyloskims/data/prerelease/phyloalps/Dichondra_micrantha:1053343/PHA002955/RSZ:RSZAXPI000773-102/

RSZ plateform == BGI?

cpouchon commented 5 years ago

elif "RSZ" in cf:
    r1path=os.path.dirname(cf)+"/"+fnmatch.filter(os.listdir(os.path.dirname(cf)), '*_1.fq.gz')[0]
    r2path=os.path.dirname(cf)+"/"+fnmatch.filter(os.listdir(os.path.dirname(cf)), '*_2.fq.gz')[0]

cpouchon commented 5 years ago

the same issue for AXZ in genoscope not the same format