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cpp-lln-lab / CPP_BIDS

a set of matlab / octave function to create BIDS comptible folder structure and filenames
https://cpp-bids.readthedocs.io/en/dev/index.html
MIT License
1 stars 9 forks source link

save config at run time #194

Closed Remi-Gau closed 2 years ago

Remi-Gau commented 2 years ago

currently all the config details are not saved by CPP_BIDS anymore because putting all metada in _bold.json makes fmriprep and mriqc freak out.

but we now don't have any trace of the experimental parameters used for a given run, which is really not ideal for reproducibility (or methods writing).

CerenB commented 2 years ago

is there a way that we can be bids-valid, but save this config file under another name?

I'm currently using createJson(cfg, 'func') but it would be nice to use in addition createJson(cfg,cfg) as well.

Remi-Gau commented 2 years ago

Yeah I can make it have a bids ISH name by default but make it possible to pass it another name

Remi-Gau commented 2 years ago

@CerenB FYI this issue was transferred from CPP_PTB to CPP_BIDS.

Remi-Gau commented 2 years ago

closed by #193