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cpp-lln-lab / bidspm

an SPM centric BIDS app
https://bidspm.readthedocs.io/en/latest/general_information.html
GNU General Public License v3.0
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saving spatial preprocessing spm graphs/ figures #113

Closed CerenB closed 3 years ago

CerenB commented 4 years ago

would it be interesting to save normalised mutual information coregistration + image realignment graphs/figures?

Remi-Gau commented 4 years ago

YES !! That will work on matlab: we need need to make sure that we open a figure and things should be displayed there. Need to curate to then make sure where things are saved: something better curated than the spm_today's-date.ps than SPM does by default.

On octave: that will be a no go I think the lack of support for a "GUI" in octave.

CerenB commented 3 years ago

@Remi-Gau and @marcobarilari FYI, even if the src folder is clean from previous .ps files, still the bidsSpatialPrepro function crashes here due to copyGraphWindowOutput function:

SPM12: spm_imcalc (v6961)                          22:26:47 - 10/11/2020
========================================================================
ImCalc Image: /Users/battal/Cerens_files/fMRI/Processed/RhythmCateg/Pilots/RhythmFT/derivatives/cpp_spm/sub-001/ses-001/anat/msub-001_ses-001_T1w_mask.nii
10-Nov-2020 22:26:48 - Done    'Image Calculator'
10-Nov-2020 22:26:48 - Done

Error using movefile
All arguments must be character vectors.

Error in copyGraphWindownOutput (line 54)
      movefile( ...

Error in copyFigures (line 20)
  imgNb = copyGraphWindownOutput(opt, subID, 'realign');

Error in bidsSpatialPrepro (line 101)
      copyFigures(BIDS, opt, subID);

Error in RhythmFT_run (line 29)
  bidsSpatialPrepro(opt);
Remi-Gau commented 3 years ago

Hum... Some bugs just don't want to die.

Can you tell me what's in the folder of RhythmFT_run at the moment of the crash?